Preprints

  1. T. Ichikawa, P. C. Guruciaga, S. Hu, S. Plunder, M. Makino, M. Hamaji, A. Stokkermans, S. Yoshida, A. Erzberger, T. Hiiragi, Boundary-guided cell alignment drives mouse epiblast maturation. (2025) bioRxiv.

  2. M. Mira Osuna, S. Plunder, E. Theveneau, Roland Le Borgne, The directionality of collective cell delamination is governed by tissue architecture and cell adhesion in a Drosophila carcinoma model. (2024) bioRxiv.

  3. S. Merino-Aceituno, S. Plunder, C. Wytrzens, H. Yoldaş, Macroscopic effects of an anisotropic Gaussian-type repulsive potential: nematic alignment and spatial effects. (2024) arxiv.

  4. S. Plunder, S. Merino-Aceituno, Convergence proof for first-order position-based dynamics: An efficient scheme for inequality constrained ODEs. (2023) arxiv.

Publications (peer-reviewed)

  1. H. Jäger, É. Grosjean, S. Plunder, C. Redenbach, A. Keilmann, B. Simeon, C. Surulescu, Cell seeding dynamics in a porous scaffold material designed for meniscus tissue regeneration. Proceedings in Applied Mathematics & Mechanics (2024) DOI: 10.1002/pamm.202400133.

  2. E. Despin-Guitard, V. S. Rosa, S. Plunder, N. Mathiah, K. Van Schoor, E. Nehme, S. Merino-Aceituno, J. Egea, M. N. Shahbazi, E. Theveneau & I. Migeotte, Non-apical mitoses contribute to cell delamination during mouse gastrulation. Nature Communications (2024) DOI:10.1038/s41467-024-51638-6.

  3. S. Plunder, C. Danesin, B. Glise, M. A. Ferreira, S. Merino-Aceituno, E. Theveneau, Modelling variability and heterogeneity of EMT scenarios highlights nuclear positioning and protrusions as main drivers of extrusion. Nature Communications (2024) DOI:10.1038/s41467-024-51372-z.

  4. S. Plunder, M. Burkard, T, Helling, U. M. Lauer, L. E. Hoelzle, L. Marongiu, Determination of optimal phage load and administration time for antibacterial treatment. Current Protocols (2024) DOI:10.1002/cpz1.954.

  5. S. Plunder, B. Simeon, The mean-field limit for particle systems with uniform full-rank constraints. Kinetic and Related Models (2023) DOI:10.3934/krm.2023012, arxiv.

  6. S. Plunder, M. Burkard, U. Lauer, S. Venturelli, L. Marongiu, Determination of phage load and administration time in simulated occurrences of antibacterial treatments. Frontiers of Medicine (2022) DOI: 10.3389/fmed.2022.1040457.

  7. S. Plunder, B. Simeon, Coupled Systems of Linear Differential-Algebraic and Kinetic Equations with Application to the Mathematical Modelling of Muscle Tissue. In: Reis, T., Grundel, S., Schöps, S. (eds) Progress in Differential-Algebraic Equations II. Differential-Algebraic Equations Forum. Springer (2020) DOI: 10.1007/978-3-030-53905-4_12, arxiv.

Thesis documents

PhD thesis on Mathematical modelling and simulation of epithelial-to-mesenchymal transitions leading to cell migration (supervisor Prof. Sara Merino-Aceituno).
Master's thesis on modelling and simulation of skeletal muscle tissue (supervisor Prof. Bernd Simeon).
Bachelor's thesis on molecular dynamics (supervisor Dr. Wolfgang Bock).