Research Projects

Current (3)

Agent-based model for symmetry breaking and digit-like elongation in limb organoids.

PythonGPU ProgrammingPDEParticle simulationsMorphogenesisDevelopmental Biology
Endothelial-to-hematopoietic transition

Modelling the endothelial-to-hematopoietic transition during embryonic blood cell formation.

JuliaAgent-based modelsDevelopmental Biology
First-order position-based dynamics

Convergence analysis and efficient numerical scheme for inequality constrained ODEs from computer graphics.

JuliaParticle simulationsNumerical analysisConstrained dynamics

Published (4)

Nematic orientation maps in epiblast formation

Topological defect transitions and cell alignment in mouse epiblast, my role was to bridge experiments and theory with quantitative image analysis.

PythonTopological defectsDevelopmental BiologyImage Analysis
Epithelial-to-mesenchymal transitions

Mechanical modelling of different EMT scenarios and their effect on cell delamination and migration.

JuliaPythonCell migrationCancer biologyAgent-based models
Anisotropic particle simulations

Macroscopic analysis of nematic alignment from anisotropic Gaussian-type repulsive potentials.

Kinetic theoryParticle simulationsPDEJulia
Mean-field limit for constrained particles

Proof of the mean-field limit for particle systems with full-rank constraints, applied to muscle tissue modelling.

Kinetic theoryPDEConstrained dynamicsMechanics

Ideas (3)

Cell migration model for plithotaxis

Agent-based model for collective cell migration guided by intercellular stress patterns.

JuliaCollective migrationAgent-based modelsCell migration
Germinal center morphology

Modelling growth and shape of germinal centers in the immune system.

JuliaImmunologyAgent-based modelsMathematical Biology
Tertiary lymphoid tissue modelling

Agent-based simulation of tertiary lymphoid structure formation.

JuliaImmunologyAgent-based modelsMathematical Biology